This study is an effort to preparing the emergy balance sheet and the emergy surplus-deficit report and also presenting the results of emergy indices analysis to accommodate all the natural resources that produce energy that is owned and controlled by the Provincial Government of Provinsi Daerah Istimewa Yogyakarta in the period 2006-2010. Further development of the analysis method presented in this report will enable policy-makers, in this case the Provincial Government of Provinsi Daerah Istimewa Yogyakarta (DIY), as the first complete and worth examination between economic and environmental accounting data before making a decision regarding the policy on natural resources, energy, and the environment.